pfSNP Gene Information Collection
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Mouse over each column header to see if the genes are enriched in any key terms (e.g: Co-expressed in certain tissue or resides in same pathway)
 Gene
Name
Chr
Text Cloud for Chromosome
2(1)  
Tissue
Expression
Text Cloud for Tissue Expression
Liver(1)  
GO Term KEGG Path PharmGKB Reported
Association
Text Cloud for PharmGKB Drug Response Association
mSigDB
Pathway
OMIM
Text Cloud for OMIM Term
Hyperoxaluria, primary, type 1,(1)  
GAD
View SNP
in this
gene
2
"alcoholism; renal disease, end stage"
"arterial disease, renal"
"atherosclerosis, coronary"
"atherosclerosis, generalized blood pressure, arterial cardiovascular disease"
"blood pressure, arterial"
"blood pressure, arterial; atherosclerosis"
"dementia, vascular"
"diabetes, type 1"
"diabetes, type 2"
"diabetes, type 2; hypertriglyceridemic waist"
"diabetes, type 2; polymetabolic syndrome"
"glaucoma; glaucoma, primary open-angle"
"hepatitis B, chronic"
"hperoxaluria, primary, type 1"
"hyperoxaluria, primary, type 1"
"hypertension, gestational"
"hypertension, pregnancy induced preeclampsia"
"hypertension, pregnancy induced"
"hypertension; blood pressure, arterial"
"hypertension; renal dysfunction, posttransplantation"
"kidney failure, chronic"
"myocardial infarct; cholesterol, HDL; triglycerides; atherosclerosis, coronary; macular degeneration; colorectal cancer"
"nephropathy, congenital obstructive"
"nephropathy, diabetic"
"nephropathy, diabetic; blood pressure, arterial; proteinuria"
"obesity; blood pressure, arterial; sleep apnea"
"pregnancy loss, recurrent"
"renal disease, end stage"
"retinopathy, diabetic"
albuminuria
allergic rhinitis
Alzheimers Disease
angiotensinogen concentrations
angiotensinogen hypertension
aortic stiffness
arterial disease
Atopy
autonomic nervous system function
Bipolar Affective Disorder
Blood Pressure
blood pressure phenotypes.
cardiac death; cardiac morbidity
cardiomyopathy
cardiovascular
cardiovascular disease
carotid intimal-medial thickening
cerebral white matter lesions
cerebrovascular disease
Chronic Glomerulonephritis
Coronary Artery Disease
coronary artery thrombosis
coronary atherosclerosis
coronary atherosclerosis.
coronary events
Coronary Heart Disease
cysclosporine toxicity
depression
diabetic nephropathy
End- Stage Renal Disease (ESRD)
Erythropoietin Induced Hypertension
esophageal varices
Essential Hypertension
familial hypertension of early onset.
glomerulonephritis
graft-versus-host disease
heart failure
high-altitude tolerance
hyperoxaluias
hyperoxaluria
hypertension
hypertension obesity
hypertension; cardiovascular disease
hypertension; left ventricular hypertrophy
Idiopathic Dilated Cardiomyopathy
immunoglobin A nephropathy
insulin response to oral glucose
intima-media thickness
kidney disease
kidney transplant
left ventricular hypertrophy
left ventricular remodeling
Left Ventricular Structure
lipid metabolism
longevity
menopause
metabolic syndrome
metamphetamine dependence
Microangiopathy- Related Cerebral Damage (MARCD)
mitral valve prolapse syndrome
myocardial infarct stroke
myocardial infarction
myocardial ischemia
nephropathy
nephropathy in other diseases
Nonfamilial Hypertrophic or Dialated Cardiomyopathy
peritoneal transport
plasma renin and prorenin levels
polycystic kidney disease
posttransplantation erythrocytosis
preeclampsia
preeclampsia; abruptio placentae
renal allograft function
renal function
renin activity; aldosterone
restenosis
restenosis after percutaneous transluminal coronary angioplasty
serum concentrations of creatinine
Stroke
suicide
The table above shows the information regarding your gene of interest. You can click on 'View pfSNP' to show the potentially functional SNPs in your gene so that you can pick SNP candidates for gene based association study.

More about pfSNP ...
pfSNP is an integrative portal providing both extensive gene level information as well as detailed SNP function information for the SNPs linked to your gene (resides within the gene region as well as 5K basepairs upstream and downstream of the gene).

We have been cited as one of the useful meta tools for SNP function analysis by UK Gen2Phen biomedical knowledge center community.

We have been cited as a useful tool for "Candidate SNP selection and SNP annotation" by GenEpi Toolbox.


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