pfSNP Gene Information Collection
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Mouse over each column header to see if the genes are enriched in any key terms (e.g: Co-expressed in certain tissue or resides in same pathway)
Text Cloud for Chromosome
Text Cloud for Tissue Expression
Bonemarrow(1)  Lung(1)  LymphNode(1)  Salivarygland(1)  T cells(1)  Thymus(1)  Tonsil(1)  Trachea(1)  
GO Term KEGG Path PharmGKB Reported
Text Cloud for PharmGKB Drug Response Association
Acute L1 Leukemia(1)  HIV(1)  HIV Infections(1)  Leukemia(1)  Lymphocytic(1)  mercaptopurine(1)  methotrexate(1)  Psoriasis(1)  
Text Cloud for OMIM Term
Psoriasis, early onset, susceptibility to,(1)  
Text Cloud for GAD Term
"alveolitis, extrinsic allergic"(1)  "arthritis, psoriatic"(1)  "diabetes, type 1"(1)  "diabetes, type 2; diabetes, type 1"(1)  "hepatitis C, chronic"(1)  "malaria, plasmodium falciparum"(1)  "osteoporosis, postmenopausal"(1)  "pancreatitis, autoimmune; pancreatitis, chronic calcifying"(1)  "pregnancy loss, recurrent"(1)  alopecia areata(1)  alveolar echinococcosis(1)  ankylosing spondylitis(1)  arthrofibrosis(1)  Asthma(1)  atopy(1)  Behcets Disease(1)  bone marrow transplantation(1)  celiac disease(1)  celiac disease; Wegeners granulomatosis; cervical cancer(1)  cytokine resposne(1)  endometriosis(1)  graft-versus-host disease(1)  graft-versus-host disease; psoriasis; celiac disease(1)  H. pylori infection(1)  head and neck cancer(1)  hematopoietic stem cell transplantation(1)  hepatitis B(1)  hepatitis C(1)  hepatitis C sicca syndrome(1)  hepatitis C; hepatitis B(1)  HIV(1)  kidney transplant complications(1)  leukemia(1)  leukemia; colorectal cancer(1)  Lupus(1)  lupus erythematosus(1)  lymphoma(1)  marrow graft rejection(1)  maternal microchimerism(1)  melanoma(1)  multiple sclerosis(1)  oral submucous fibrosis(1)  pemphigus(1)  periodontitis(1)  pityriasis rosea(1)  psoriasis(1)  psoriasis psoriatic arthritis(1)  psoriasis; celiac disease(1)  psoriasis; psoriatic arthritis(1)  psoriatic arthritis(1)  rheumatic heart disease(1)  sarcoidosis(1)  Sjogrens syndrome(1)  spondyloarthropathies(1)  stem cell transplantation outcome(1)  tuberculosis(1)  typhoid fever(1)  ulcerative colitis(1)  uveitis(1)  vitiligo(1)  (0)  
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in this
The table above shows the information regarding your gene of interest. You can click on 'View pfSNP' to show the potentially functional SNPs in your gene so that you can pick SNP candidates for gene based association study.

More about pfSNP ...
pfSNP is an integrative portal providing both extensive gene level information as well as detailed SNP function information for the SNPs linked to your gene (resides within the gene region as well as 5K basepairs upstream and downstream of the gene).

We have been cited as one of the useful meta tools for SNP function analysis by UK Gen2Phen biomedical knowledge center community.

We have been cited as a useful tool for "Candidate SNP selection and SNP annotation" by GenEpi Toolbox.

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