pfSNP Gene Information Collection
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Mouse over each column header to see if the genes are enriched in any key terms (e.g: Co-expressed in certain tissue or resides in same pathway)
 Gene
Name
Chr
Text Cloud for Chromosome
15(1)  
Tissue
Expression
Text Cloud for Tissue Expression
FetalLiver(1)  Liver(1)  
GO Term KEGG Path
Text Cloud for KEGG Path
Glycerolipid metabolism(1)  
PharmGKB Reported
Association
mSigDB
Pathway
OMIM GAD
Text Cloud for GAD Term
"atherosclerosis, coronary cholesterol, HDL triglycerides"(1)  "atherosclerosis, coronary"(1)  "atherosclerosis, coronary; diabetes, type 2; lipids; stroke, ischemic"(1)  "atherosclerosis, generalized"(1)  "blood pressure, arterial hypertension"(1)  "body mass; triglycerides; cholesterol, total; blood pressure; leptin; apoA1; apoA2; fasting blood sugar; fasting blood sugar"(1)  "cholesterol, HDL cholesterol, LDL"(1)  "cholesterol, HDL"(1)  "cholesterol, HDL; cholesterol, LDL; cholesterol, total; apoA1; apoB; apoE; apoC-III"(1)  "cholesterol, HDL; triglycerides"(1)  "cholesterol; cholesterol, HDL; lipoprotein; lipids"(1)  "diabetes, type 2"(1)  "diabetes, type 2; hepatic lipase activity"(1)  "heart disease, ischemic"(1)  "hypertension, pregnancy induced preeclampsia"(1)  bone density(1)  cardiac death(1)  carotid artery stenosis(1)  cholesterol; apoA-IV; apoE; triacylglycerols(1)  coronary artery calcium(1)  coronary artery disease(1)  coronary calcification(1)  Coronary Heart Disease(1)  diabetic nephropathy(1)  dyslipidemia(1)  glucose tolerance(1)  glucose tolerance; lipid metabolism(1)  HDL Cholesterol(1)  HDL cholesterol levels(1)  heritable lipolytic deficiency.(1)  high plasma concentrations of high density lipoprotein ch(1)  hypercholesterolemia(1)  hypertension(1)  increased concentration of HDL-C and decreased promoter activity(1)  insulin(1)  intima-media thickness(1)  lipids(1)  lipoprotein(1)  lipoprotein subclass profiles(1)  lipoproteins(1)  low hepatic lipase activity(1)  lower levels of hepatic lipase activity buoyant LDL and higher HDL2 cholesterol(1)  metabolism disorders(1)  normal variation(1)  obesity(1)  plasma lipid levels(1)  Post- Heparin Hepatic Lipase Activity ???????(1)  restenosis(1)  triglycerides(1)  triglycerides; insulin(1)  
View SNP
in this
gene
15
"atherosclerosis, coronary cholesterol, HDL triglycerides"
"atherosclerosis, coronary"
"atherosclerosis, coronary; diabetes, type 2; lipids; stroke, ischemic"
"atherosclerosis, generalized"
"blood pressure, arterial hypertension"
"body mass; triglycerides; cholesterol, total; blood pressure; leptin; apoA1; apoA2; fasting blood sugar; fasting blood sugar"
"cholesterol, HDL cholesterol, LDL"
"cholesterol, HDL"
"cholesterol, HDL; cholesterol, LDL; cholesterol, total; apoA1; apoB; apoE; apoC-III"
"cholesterol, HDL; triglycerides"
"cholesterol; cholesterol, HDL; lipoprotein; lipids"
"diabetes, type 2"
"diabetes, type 2; hepatic lipase activity"
"heart disease, ischemic"
"hypertension, pregnancy induced preeclampsia"
bone density
cardiac death
carotid artery stenosis
cholesterol; apoA-IV; apoE; triacylglycerols
coronary artery calcium
Coronary Artery Disease
coronary calcification
coronary heart disease
diabetic nephropathy
dyslipidemia
glucose tolerance
glucose tolerance; lipid metabolism
HDL Cholesterol
HDL cholesterol levels
heritable lipolytic deficiency.
high plasma concentrations of high density lipoprotein ch
hypercholesterolemia
hypertension
increased concentration of HDL-C and decreased promoter activity
insulin
intima-media thickness
lipids
lipoprotein
lipoprotein subclass profiles
lipoproteins
low hepatic lipase activity
lower levels of hepatic lipase activity buoyant LDL and higher HDL2 cholesterol
metabolism disorders
normal variation
obesity
plasma lipid levels
Post- Heparin Hepatic Lipase Activity ???????
restenosis
triglycerides
triglycerides; insulin
The table above shows the information regarding your gene of interest. You can click on 'View pfSNP' to show the potentially functional SNPs in your gene so that you can pick SNP candidates for gene based association study.

More about pfSNP ...
pfSNP is an integrative portal providing both extensive gene level information as well as detailed SNP function information for the SNPs linked to your gene (resides within the gene region as well as 5K basepairs upstream and downstream of the gene).

We have been cited as one of the useful meta tools for SNP function analysis by UK Gen2Phen biomedical knowledge center community.

We have been cited as a useful tool for "Candidate SNP selection and SNP annotation" by GenEpi Toolbox.


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